EU Procure

Replacing genome variant annotation, filtering and interpretation software

Deadline extended

Replacing genome variant annotation, filtering and interpretation software

Buyer
Stichting Amsterdam UMC
CPV
48180000 — Medical software package
Region
Netherlands
Procedure
open
Published
Mar 19, 2026
Deadline
8 Jun 2026, 10:00

Description

Data from the sequencer is processed through a bioinformatics pipeline (currently GATK, soon transitioning to DRAGEN), which outputs all possible variants relative to the reference genome in tabular form in a VCF file. This VCF file is imported into the software, where annotation first takes place: all valid variants are separated from invalid variants based on quality parameters. Because this results in a large number of variants, they are subsequently filtered based on laboratory defined cri...

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Stichting Amsterdam UMC published 15 tenders in the last 12 months.

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Source: original notice on TED.